Public Member Functions
	Assembler (const Mesh &mesh, const RCP< EquationSet > &eqn, const Array< VectorType< double > > &rowVectorType, const Array< VectorType< double > > &colVectorType, bool partitionBCs)
	Assembler (const Mesh &mesh, const RCP< EquationSet > &eqn)
const Array< RCP< DOFMapBase > > &	rowMap () const
const Array< RCP< DOFMapBase > > &	colMap () const
const Array< RCP < DiscreteSpace > > &	solutionSpace () const
const Array< RCP < DiscreteSpace > > &	rowSpace () const
VectorSpace< double >	solnVecSpace () const
VectorSpace< double >	rowVecSpace () const
const Array< RCP< Set< int > > > &	bcRows ()
TSFExtended::LinearOperator < double >	allocateMatrix () const
	Allocate, but do not fill, the matrix.
void	assemble (TSFExtended::LinearOperator< double > &A, Array< Vector< double > > &b) const
void	assembleSensitivities (TSFExtended::LinearOperator< double > &A, Array< Vector< double > > &b) const
void	assemble (Array< Vector< double > > &b) const
void	evaluate (double &value, Array< Vector< double > > &gradient) const
void	evaluate (double &value) const
void	getGraph (int br, int bc, Array< int > &graphData, Array< int > &rowPtrs, Array< int > &nnzPerRow) const
void	incrementalGetGraph (int br, int bc, IncrementallyConfigurableMatrixFactory *mf) const
void	flushConfiguration ()
Vector< double >	convertToMonolithicVector (const Array< Vector< double > > &internalBlock, const Array< Vector< double > > &bcBlock) const
const RCP< EquationSet > &	eqnSet () const
int	maxWatchFlagSetting (const std::string &param) const
Static Public Member Functions
static int &	workSetSize ()
static int &	numAssembleCalls ()
static bool &	matrixEliminatesRepeatedCols ()
static Time &	assemblyTimer ()
static Time &	configTimer ()
static Time &	fillTimer ()
Private Member Functions
void	init (const Mesh &mesh, const RCP< EquationSet > &eqn)
bool	detectInternalBdry (int cellDim, const CellFilter &filter) const
void	displayEvaluationResults (const EvalContext &context, const EvaluatableExpr *evalExpr, const Array< double > &constantCoeffs, const Array< RCP< EvalVector > > &vectorCoeffs) const
void	assemblyLoop (const ComputationType &compType, RCP< AssemblyKernelBase > kernel) const
void	configureMatrix (LinearOperator< double > &A, Array< Vector< double > > &b) const
void	configureVector (Array< Vector< double > > &b) const
void	configureMatrixBlock (int br, int bc, LinearOperator< double > &A) const
void	configureVectorBlock (int br, Vector< double > &b) const
Array< Array< int > >	findNonzeroBlocks () const
IntegrationCellSpecifier	whetherToUseCofacets (const Array< RCP< IntegralGroup > > &groups, const EvaluatableExpr *ee, bool isMaximalCell, int verb) const
Static Private Member Functions
static int	defaultWorkSetSize ()
Private Attributes
bool	partitionBCs_
bool	matNeedsConfiguration_
bool	matNeedsFinalization_
int	numConfiguredColumns_
Mesh	mesh_
RCP< EquationSet >	eqn_
Array< RCP< DOFMapBase > >	rowMap_
Array< RCP< DOFMapBase > >	colMap_
Array< RCP< DiscreteSpace > >	externalRowSpace_
Array< RCP< DiscreteSpace > >	externalColSpace_
Array< RCP< DiscreteSpace > >	privateRowSpace_
Array< RCP< DiscreteSpace > >	privateColSpace_
Array< RCP< Set< int > > >	bcRows_
Array< RCP< Set< int > > >	bcCols_
Array< RegionQuadCombo >	rqc_
Map< ComputationType, Array < EvalContext > >	contexts_
Map< ComputationType, Array < int > >	skipRqc_
Array< int >	isBCRqc_
Array< int >	isInternalBdry_
Map< ComputationType, Array < Array< RCP< IntegralGroup > > > >	groups_
Array< RCP< StdFwkEvalMediator > >	mediators_
Map< ComputationType, Array < const EvaluatableExpr * > >	evalExprs_
RCP< EvalManager >	evalMgr_
Array< RCP< Array< int > > >	isBCRow_
Array< RCP< Array< int > > >	isBCCol_
Array< RCP< std::set< int > > >	remoteBCCols_
Array< int >	lowestRow_
Array< int >	lowestCol_
Array< VectorType< double > >	rowVecType_
Array< VectorType< double > >	colVecType_
Map< int, int >	testIDToBlockMap_
Map< int, int >	unkIDToBlockMap_
Map< int, int >	fixedParamIDToVectorNumber_
Map< ComputationType, Array < IntegrationCellSpecifier > >	rqcRequiresMaximalCofacets_
Array< RCP < PartitionedToMonolithicConverter > >	converter_

Detailed Description

Definition at line 75 of file SundanceAssembler.hpp.

Constructor & Destructor Documentation

Assembler::Assembler	(	const Mesh &	mesh,
		const RCP< EquationSet > &	eqn,
		const Array< VectorType< double > > &	rowVectorType,
		const Array< VectorType< double > > &	colVectorType,
		bool	partitionBCs
	)

Definition at line 130 of file SundanceAssembler.cpp.

References assemblerCtorTimer(), and Sundance::init().

Assembler::Assembler	(	const Mesh &	mesh,
		const RCP< EquationSet > &	eqn
	)

Definition at line 173 of file SundanceAssembler.cpp.

References assemblerCtorTimer(), and Sundance::init().

Member Function Documentation

TSFExtended::LinearOperator< double > Assembler::allocateMatrix ( ) const

Allocate, but do not fill, the matrix.

Definition at line 959 of file SundanceAssembler.cpp.

References configureMatrix().

void Assembler::assemble	(	TSFExtended::LinearOperator< double > &	A,
		Array< Vector< double > > &	b
	)		const

Definition at line 1390 of file SundanceAssembler.cpp.

References assemblyLoop(), assemblyTimer(), colMap_, configureMatrix(), Sundance::Map< Key, Value, Compare >::containsKey(), contexts_, eqn_, isBCCol_, isBCRow_, lowestCol_, lowestRow_, Sundance::MatrixAndVector, Sundance::Out::os(), partitionBCs_, Sundance::Handle< PointerType >::print(), rowMap_, SUNDANCE_BANNER1, and SUNDANCE_MSG1.

void Assembler::assemble ( Array< Vector< double > > & b ) const

Definition at line 1462 of file SundanceAssembler.cpp.

References assemblyLoop(), assemblyTimer(), configureVector(), Sundance::Map< Key, Value, Compare >::containsKey(), contexts_, eqn_, isBCRow_, lowestRow_, partitionBCs_, rowMap_, SUNDANCE_BANNER1, SUNDANCE_MSG1, and Sundance::VectorOnly.

void Assembler::assembleSensitivities	(	TSFExtended::LinearOperator< double > &	A,
		Array< Vector< double > > &	b
	)		const

Definition at line 1430 of file SundanceAssembler.cpp.

References assemblyLoop(), assemblyTimer(), colMap_, configureMatrix(), Sundance::Map< Key, Value, Compare >::containsKey(), contexts_, eqn_, isBCCol_, isBCRow_, lowestCol_, lowestRow_, partitionBCs_, rowMap_, Sundance::Sensitivities, SUNDANCE_BANNER1, and SUNDANCE_MSG1.

void Assembler::assemblyLoop	(	const ComputationType &	compType,
		RCP< AssemblyKernelBase >	kernel
	)		const `[private]`

----- Create Transformation objects for each integral group -------

Definition at line 991 of file SundanceAssembler.cpp.

References Sundance::CellSet::begin(), Sundance::Mesh::cellType(), colMap_, Sundance::Mesh::comm(), contexts_, Sundance::CellFilter::dimension(), displayEvaluationResults(), Sundance::CellSet::end(), eqn_, evalExprs_, evalMgr_, fillTimer(), Sundance::Map< Key, Value, Compare >::get(), Sundance::CellFilter::getCells(), groups_, Sundance::ElementIntegral::invalidateTransformationMatrices(), isBCRqc_, isInternalBdry_, mediators_, mesh_, Sundance::Mesh::ownerProcID(), Sundance::Evaluator::resetNumCalls(), rowMap_, rqc_, rqcRequiresMaximalCofacets_, skipRqc_, Sundance::Mesh::spatialDim(), SUNDANCE_BANNER1, SUNDANCE_MSG1, SUNDANCE_MSG2, SUNDANCE_MSG4, Sundance::toString(), and workSetSize().

Referenced by assemble(), assembleSensitivities(), and evaluate().

static Time& Sundance::Assembler::assemblyTimer ( ) [inline, static]

Definition at line 179 of file SundanceAssembler.hpp.

Referenced by assemble(), assembleSensitivities(), and evaluate().

const Array<RCP<Set<int> > >& Sundance::Assembler::bcRows ( ) [inline]

Definition at line 115 of file SundanceAssembler.hpp.

References bcRows_.

const Array<RCP<DOFMapBase> >& Sundance::Assembler::colMap ( ) const [inline]

Definition at line 97 of file SundanceAssembler.hpp.

References colMap_.

Referenced by configureMatrixBlock().

static Time& Sundance::Assembler::configTimer ( ) [inline, static]

Definition at line 187 of file SundanceAssembler.hpp.

Referenced by configureMatrix(), configureMatrixBlock(), and configureVector().

void Assembler::configureMatrix	(	LinearOperator< double > &	A,
		Array< Vector< double > > &	b
	)		const `[private]`

Definition at line 840 of file SundanceAssembler.cpp.

References colMap_, configTimer(), configureMatrixBlock(), configureVector(), TSFExtended::LinearOperator< Scalar >::endBlockFill(), eqn_, findNonzeroBlocks(), TSFExtended::makeBlockOperator(), matNeedsConfiguration_, rowMap_, rowVecSpace(), TSFExtended::LinearOperator< Scalar >::setBlock(), solnVecSpace(), and SUNDANCE_MSG1.

Referenced by allocateMatrix(), assemble(), and assembleSensitivities().

void Assembler::configureMatrixBlock	(	int	br,
		int	bc,
		LinearOperator< double > &	A
	)		const `[private]`

Definition at line 886 of file SundanceAssembler.cpp.

References colMap(), colVecType_, configTimer(), TSFExtended::CollectivelyConfigurableMatrixFactory::configure(), eqn_, TSFExtended::IncrementallyConfigurableMatrixFactory::finalize(), getGraph(), incrementalGetGraph(), isBCCol_, isBCRow_, lowestCol_, lowestRow_, matAllocTimer(), matFinalizeTimer(), partitionBCs_, privateColSpace_, privateRowSpace_, remoteBCCols_, rowMap(), rowSpace(), rowVecType_, SUNDANCE_MSG1, SUNDANCE_MSG2, and SUNDANCE_MSG3.

Referenced by configureMatrix().

void Assembler::configureVector ( Array< Vector< double > > & b ) const [private]

Definition at line 753 of file SundanceAssembler.cpp.

References configTimer(), configureVectorBlock(), TSFExtended::VectorSpace< Scalar >::createMember(), eqn_, numConfiguredColumns_, partitionBCs_, privateRowSpace_, TSFExtended::productSpace(), rowSpace(), and SUNDANCE_MSG1.

Referenced by assemble(), configureMatrix(), and evaluate().

void Assembler::configureVectorBlock	(	int	br,
		Vector< double > &	b
	)		const `[private]`

Definition at line 819 of file SundanceAssembler.cpp.

References TSFExtended::VectorSpace< Scalar >::createMember(), eqn_, partitionBCs_, privateRowSpace_, Sundance::Handle< PointerType >::ptr(), and SUNDANCE_MSG2.

Referenced by configureVector().

Vector< double > Assembler::convertToMonolithicVector	(	const Array< Vector< double > > &	internalBlock,
		const Array< Vector< double > > &	bcBlock
	)		const

Definition at line 2175 of file SundanceAssembler.cpp.

References TSFExtended::VectorSpace< Scalar >::createMember(), TSFExtended::productSpace(), TSFExtended::Vector< Scalar >::setBlock(), and SUNDANCE_CHECK_ARRAY_SIZE_MATCH.

static int Sundance::Assembler::defaultWorkSetSize ( ) [inline, static, private]

Definition at line 250 of file SundanceAssembler.hpp.

Referenced by workSetSize().

bool Assembler::detectInternalBdry	(	int	cellDim,
		const CellFilter &	filter
	)		const `[private]`

Definition at line 669 of file SundanceAssembler.cpp.

References Sundance::CellSet::begin(), Sundance::CellSet::end(), Sundance::CellFilter::getCells(), mesh_, Sundance::Mesh::numMaxCofacets(), and Sundance::Mesh::spatialDim().

Referenced by init().

void Assembler::displayEvaluationResults	(	const EvalContext &	context,
		const EvaluatableExpr *	evalExpr,
		const Array< double > &	constantCoeffs,
		const Array< RCP< EvalVector > > &	vectorCoeffs
	)		const `[private]`

Definition at line 972 of file SundanceAssembler.cpp.

References Sundance::Out::os(), and Sundance::EvaluatableExpr::sparsitySuperset().

Referenced by assemblyLoop().

const RCP<EquationSet>& Sundance::Assembler::eqnSet ( ) const [inline]

Definition at line 172 of file SundanceAssembler.hpp.

References eqn_.

Referenced by maxWatchFlagSetting().

void Assembler::evaluate	(	double &	value,
		Array< Vector< double > > &	gradient
	)		const

Definition at line 1498 of file SundanceAssembler.cpp.

References assemblyLoop(), assemblyTimer(), Sundance::Mesh::comm(), configureVector(), Sundance::Map< Key, Value, Compare >::containsKey(), contexts_, eqn_, Sundance::FunctionalAndGradient, Sundance::gradient(), isBCRow_, lowestRow_, mesh_, partitionBCs_, rowMap_, SUNDANCE_BANNER1, and Sundance::value.

void Assembler::evaluate ( double & value ) const

Definition at line 1533 of file SundanceAssembler.cpp.

References assemblyLoop(), assemblyTimer(), Sundance::Mesh::comm(), Sundance::Map< Key, Value, Compare >::containsKey(), contexts_, eqn_, Sundance::FunctionalOnly, mesh_, SUNDANCE_BANNER1, and Sundance::value.

static Time& Sundance::Assembler::fillTimer ( ) [inline, static]

Definition at line 195 of file SundanceAssembler.hpp.

Referenced by assemblyLoop().

Array< Array< int > > Assembler::findNonzeroBlocks ( ) const [private]

Definition at line 2054 of file SundanceAssembler.cpp.

References Sundance::Set< Key, Compare >::begin(), Sundance::Set< Key, Compare >::end(), eqn_, Sundance::OrderedPair< A, B >::first(), Sundance::OrderedPair< A, B >::second(), SUNDANCE_MSG3, and SUNDANCE_OUT.

Referenced by configureMatrix().

void Sundance::Assembler::flushConfiguration ( ) [inline]

Definition at line 154 of file SundanceAssembler.hpp.

References matNeedsConfiguration_, and numConfiguredColumns_.

void Assembler::getGraph	(	int	br,
		int	bc,
		Array< int > &	graphData,
		Array< int > &	rowPtrs,
		Array< int > &	nnzPerRow
	)		const

void Assembler::incrementalGetGraph	(	int	br,
		int	bc,
		IncrementallyConfigurableMatrixFactory *	mf
	)		const

Definition at line 1832 of file SundanceAssembler.cpp.

References Sundance::CellSet::begin(), Sundance::CellFilter::dimension(), Sundance::CellSet::end(), Sundance::OrderedPair< A, B >::first(), Sundance::CellFilter::getCells(), graphBuildTimer(), TSFExtended::IncrementallyConfigurableMatrixFactory::initializeNonzerosInRow(), Sundance::OrderedPair< A, B >::second(), SUNDANCE_MSG2, SUNDANCE_MSG3, and SUNDANCE_OUT.

Referenced by configureMatrixBlock().

void Assembler::init	(	const Mesh &	mesh,
		const RCP< EquationSet > &	eqn
	)		`[private]`

Definition at line 213 of file SundanceAssembler.cpp.

References Sundance::Set< Key, Compare >::begin(), Sundance::EvalContext::brief(), Sundance::Mesh::cellType(), colMap_, colVecType_, Sundance::Set< Key, Compare >::contains(), contexts_, converter_, detectInternalBdry(), Sundance::dimension(), Sundance::RegionQuadCombo::domain(), eqn_, evalExprs_, externalColSpace_, externalRowSpace_, fixedParamIDToVectorNumber_, Sundance::FunctionalAndGradient, Sundance::FunctionalOnly, Sundance::EvaluatableExpr::getEvalExpr(), groups_, Sundance::WatchFlag::isActive(), isBCCol_, isBCRow_, isBCRqc_, isInternalBdry_, lowestRow_, Sundance::MatrixAndVector, mediators_, mesh_, Sundance::WatchFlag::param(), Sundance::RegionQuadCombo::paramCurve(), partitionBCs_, privateColSpace_, privateRowSpace_, Sundance::Map< Key, Value, Compare >::put(), Sundance::RegionQuadCombo::quad(), rowMap_, rowVecType_, rqc_, rqcRequiresMaximalCofacets_, Sundance::Sensitivities, skipRqc_, Sundance::EvaluatableExpr::sparsitySuperset(), Sundance::Mesh::spatialDim(), SUNDANCE_BANNER1, SUNDANCE_MSG1, SUNDANCE_MSG2, SUNDANCE_MSG3, Sundance::testBasisArray(), Sundance::unkBasisArray(), Sundance::VectorOnly, Sundance::RegionQuadCombo::watch(), and whetherToUseCofacets().

static bool& Sundance::Assembler::matrixEliminatesRepeatedCols ( ) [inline, static]

Definition at line 169 of file SundanceAssembler.hpp.

int Assembler::maxWatchFlagSetting ( const std::string & param ) const

Definition at line 2222 of file SundanceAssembler.cpp.

References eqnSet().

static int& Sundance::Assembler::numAssembleCalls ( ) [inline, static]

Definition at line 166 of file SundanceAssembler.hpp.

const Array<RCP<DOFMapBase> >& Sundance::Assembler::rowMap ( ) const [inline]

Definition at line 93 of file SundanceAssembler.hpp.

References rowMap_.

Referenced by configureMatrixBlock().

const Array<RCP<DiscreteSpace> >& Sundance::Assembler::rowSpace ( ) const [inline]

Definition at line 105 of file SundanceAssembler.hpp.

References externalRowSpace_.

Referenced by configureMatrixBlock(), configureVector(), and rowVecSpace().

VectorSpace< double > Assembler::rowVecSpace ( ) const

Definition at line 2157 of file SundanceAssembler.cpp.

References eqn_, TSFExtended::productSpace(), and rowSpace().

Referenced by configureMatrix().

VectorSpace< double > Assembler::solnVecSpace ( ) const

Definition at line 2140 of file SundanceAssembler.cpp.

References eqn_, TSFExtended::productSpace(), and solutionSpace().

Referenced by configureMatrix().

const Array<RCP<DiscreteSpace> >& Sundance::Assembler::solutionSpace ( ) const [inline]

Definition at line 101 of file SundanceAssembler.hpp.

References externalColSpace_.

Referenced by solnVecSpace().

IntegrationCellSpecifier Assembler::whetherToUseCofacets	(	const Array< RCP< IntegralGroup > > &	groups,
		const EvaluatableExpr *	ee,
		bool	isMaximalCell,
		int	verb
	)		const `[private]`