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Didasko Development
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// @HEADER // *********************************************************************** // // Didasko Tutorial Package // Copyright (2005) Sandia Corporation // // Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive // license for use of this work by or on behalf of the U.S. Government. // // This library is free software; you can redistribute it and/or modify // it under the terms of the GNU Lesser General Public License as // published by the Free Software Foundation; either version 2.1 of the // License, or (at your option) any later version. // // This library is distributed in the hope that it will be useful, but // WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. // // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 // USA // // Questions about Didasko? Contact Marzio Sala (marzio.sala _AT_ gmail.com) // // *********************************************************************** // @HEADER // Generate a matrix using triutils and redistribute with Zoltan. #include "Didasko_config.h" #if defined(HAVE_DIDASKO_EPETRA) && defined(HAVE_DIDASKO_EPETRAEXT) && defined(HAVE_ZOLTAN) #include "Epetra_ConfigDefs.h" #ifdef HAVE_MPI #include "mpi.h" #include "Epetra_MpiComm.h" #else #include "Epetra_SerialComm.h" #endif #include "Trilinos_Util.h" #include "Epetra_Comm.h" #include "Epetra_Map.h" #include "Epetra_Time.h" #include "Epetra_BlockMap.h" #include "Epetra_MultiVector.h" #include "Epetra_Vector.h" #include "Epetra_Export.h" #include "Epetra_CrsMatrix.h" #include "Epetra_VbrMatrix.h" #include "Epetra_LinearProblem.h" #include "Trilinos_Util_CrsMatrixGallery.h" #include "EpetraExt_Zoltan_CrsGraph.h" // #include "EpetraExt_Transform.h" int main(int argc, char *argv[]) { #ifdef HAVE_MPI MPI_Init(&argc,&argv); Epetra_MpiComm Comm (MPI_COMM_WORLD); #else Epetra_SerialComm Comm; #endif int MyPID = Comm.MyPID(); int n = 4; /* n by n grid */ // Generate Laplacian2d gallery matrix Trilinos_Util::CrsMatrixGallery G("laplace_2d", Comm); G.Set("problem_size", n*n); G.Set("map_type", "linear"); // Linear map initially // Copy the CrsMatrix to A. Epetra_CrsMatrix A (*(G.GetMatrix())); // Epetra_CrsGraph Graph (A.Graph()); cout << "Matrix A: " << A << endl; // cout << "Graph of A: " << A.Graph() << endl; // Repartition graph using Zoltan cout << "Calling Zoltan via EpetraExt to repartition the graph." << endl; // First create a transform EpetraExt::Zoltan_CrsGraph ZoltanTrans; // Then apply the transform to the graph. Epetra_CrsGraph & BalGraph = ZoltanTrans(const_cast<Epetra_CrsGraph&>(A.Graph())); // Epetra_CrsGraph & BalGraph = ZoltanTrans(Graph); // cout << "Graph of A (not changed after balancing) : " << A.Graph() << endl; // cout << "Balanced Graph of A: " << BalGraph << endl; // Create Exporter to rebalance the matrix from the row maps Epetra_Export exporter(A.Graph().RowMap(), BalGraph.RowMap()); cout << "Old rowmap for A: " << A.Graph().RowMap() << endl; cout << "New rowmap for A: " << BalGraph.RowMap() << endl; cout << "Proc " << MyPID << ": NumSend = " << exporter.NumSend() << ", NumRecv = " << exporter.NumRecv() << endl; Epetra_Time Timer(Comm); Comm.Barrier(); double startTime = Timer.ElapsedTime(); // Export A to new distribution. Epetra_CrsMatrix BalA(Copy, BalGraph); BalA.Export(A, exporter, Insert); Comm.Barrier(); double matrixRedistributeTime = Timer.ElapsedTime() - startTime; cout << "Rebalanced matrix: " << BalA << endl ; if( MyPID==0 ) { cout << "Matrix redistribute time (sec) = " << matrixRedistributeTime << endl; } #ifdef HAVE_MPI MPI_Finalize() ; #endif return(0); } #else #include <stdlib.h> #include <stdio.h> #ifdef HAVE_MPI #include "mpi.h" #endif int main(int argc, char *argv[]) { #ifdef HAVE_MPI MPI_Init(&argc,&argv); #endif puts("Please configure Didasko with:\n" "--enable-epetra\n" "--enable-epetraext\n" "--enable-epetraext-zoltan"); #ifdef HAVE_MPI MPI_Finalize(); #endif return 0; } #endif
1.7.4